Stem-loop cfa-mir-10a

Accession

MI0008161

Description

Canis lupus familiaris cfa-mir-10a precursor miRNA

Literature search

11 open access papers mention cfa-mir-10a
(17 sentences)

Sequence

7635993 reads, 13477.0 reads per million, 81 experiments

UACCCUGUAGAUCCGAAUUUGUguaaggaauuuuguggucaCAAAUUCGUAUCUAGGGGAAUA
...(((.(((((.((((((((((................)))))))))).))))).)))....

Structure

-UAC   G     C          uaaggaa 
    CCU UAGAU CGAAUUUGUg       u
    ||| ||||| ||||||||||        
    GGG AUCUA GCUUAAACac       u
AUAA   G     U          ugguguu 

Annotation confidence High

Genome context

9: 25636582-25636644 [-]

Mature cfa-miR-10a-5p

• Accession: MIMAT0006737
• Description: Canis lupus familiaris cfa-miR-10a-5p mature miRNA
• Sequence: 1 - UACCCUGUAGAUCCGAAUUUGU - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-10a-3p

• Accession: MIMAT0051857
• Description: Canis lupus familiaris cfa-miR-10a-3p mature miRNA
• Sequence: 42 - CAAAUUCGUAUCUAGGGGAAUA - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415