Stem-loop cfa-mir-152

Accession

MI0008162

Description

Canis lupus familiaris cfa-mir-152 precursor miRNA

Literature search

7 open access papers mention cfa-mir-152
(9 sentences)

Sequence

1091724 reads, 2373.0 reads per million, 82 experiments

AGGUUCUGUGAUACACUCCGACUcgggcucuggagcagUCAGUGCAUGACAGAACUUGG
(((((((((.((.((((..((((...(((....))))))))))).)).)))))))))..

Structure

--         G  A    CC    cgg   c 
  AGGUUCUGU AU CACU  GACU   gcu u
  ||||||||| || ||||  ||||   |||  
  UUCAAGACA UA GUGA  CUga   cga g
GG         G  C    --    ---   g 

Annotation confidence High

Genome context

9: 25128568-25128626 [-]

Mature cfa-miR-152-5p

• Accession: MIMAT0051858
• Description: Canis lupus familiaris cfa-miR-152-5p mature miRNA
• Sequence: 1 - AGGUUCUGUGAUACACUCCGACU - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-152-3p

• Accession: MIMAT0006738
• Description: Canis lupus familiaris cfa-miR-152-3p mature miRNA
• Sequence: 39 - UCAGUGCAUGACAGAACUUGG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415