Stem-loop cfa-mir-1844

Accession

MI0008164

Description

Canis lupus familiaris cfa-mir-1844 precursor miRNA

Sequence

18813 reads, 15.0 reads per million, 75 experiments

AGGACUACGGACGGGCUGAGCUuucaggcuccccacagCUCUGCCCGACUCUGGUUCGCA
.((((((.((.(((((.(((((....((....))..))))).))))).)).))))))...

Structure

--A      C  A     U     uuca  c 
   GGACUA GG CGGGC GAGCU    gg u
   |||||| || ||||| |||||    ||  
   CUUGGU UC GCCCG CUCga    cc c
ACG      C  A     U     --ca  c 

Annotation confidence High

Genome context

9: 33568603-33568662 [+]

Mature cfa-miR-1844-5p

• Accession: MIMAT0006740
• Description: Canis lupus familiaris cfa-miR-1844-5p mature miRNA
• Sequence: 1 - AGGACUACGGACGGGCUGAGCU - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-1844-3p

• Accession: MIMAT0051860
• Description: Canis lupus familiaris cfa-miR-1844-3p mature miRNA
• Sequence: 39 - CUCUGCCCGACUCUGGUUCGCA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415