Stem-loop cfa-mir-21

Accession

MI0008165

Description

Canis lupus familiaris cfa-mir-21 precursor miRNA

Literature search

62 open access papers mention cfa-mir-21
(280 sentences)

Sequence

57343009 reads, 86619.0 reads per million, 82 experiments

UAGCUUAUCAGACUGAUGUUGACuguugaaucucauggCAACAGCAGUCGAUGGGCUGUC
(((((((((.(((((.(((((.((((.((...))))))))))).))))))))))))))..

Structure

--         A     A     A    u  a 
  UAGCUUAUC GACUG UGUUG Cugu ga  
  ||||||||| ||||| ||||| |||| || u
  GUCGGGUAG CUGAC ACAAC ggua cu  
CU         -     G     -    -  c 

Annotation confidence High

Genome context

9: 35150885-35150944 [+]

Mature cfa-miR-21-5p

• Accession: MIMAT0006741
• Description: Canis lupus familiaris cfa-miR-21-5p mature miRNA
• Sequence: 1 - UAGCUUAUCAGACUGAUGUUGAC - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-21-3p

• Accession: MIMAT0051861
• Description: Canis lupus familiaris cfa-miR-21-3p mature miRNA
• Sequence: 39 - CAACAGCAGUCGAUGGGCUGUC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415