Stem-loop cfa-mir-652

Accession

MI0008167

Description

Canis lupus familiaris cfa-mir-652 precursor miRNA

Literature search

2 open access papers mention cfa-mir-652
(4 sentences)

Sequence

117259 reads, 193.0 reads per million, 80 experiments

ACAACCCUAGGAGAGGGUGCCAUUcacauagacuauaauugAAUGGCGCCACUAGGGUUGUGC
((((((((((.....(((((((((((..((.....))..))))))))))).))))))))))..

Structure

--          GAGAG           ca  g 
  ACAACCCUAG     GGUGCCAUUca  ua a
  ||||||||||     |||||||||||  || c
  UGUUGGGAUC     CCGCGGUAAgu  au u
CG          ----A           ua  a 

Annotation confidence High

Genome context

X: 84920613-84920675 [+]

Mature cfa-miR-652-5p

• Accession: MIMAT0051863
• Description: Canis lupus familiaris cfa-miR-652-5p mature miRNA
• Sequence: 1 - ACAACCCUAGGAGAGGGUGCCAUU - 24
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-652-3p

• Accession: MIMAT0006743
• Description: Canis lupus familiaris cfa-miR-652-3p mature miRNA
• Sequence: 42 - AAUGGCGCCACUAGGGUUGUGC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415