Stem-loop cfa-mir-224

Accession

MI0008168

Description

Canis lupus familiaris cfa-mir-224 precursor miRNA

Literature search

5 open access papers mention cfa-mir-224
(5 sentences)

Sequence

26563 reads, 52.0 reads per million, 79 experiments

CAAGUCACUAGUGGUUCCGUUUAGuagaugauuaugcauuguuucaAAAUGGUGCCCUAGUGACUGCAA
..(((((((((.(((.((((((.(.(((((((.....)))))))).)))))).))))))))))))....

Structure

--CA         U   U      A u       u 
    AGUCACUAG GGU CCGUUU G agaugau a
    ||||||||| ||| |||||| | ||||||| u
    UCAGUGAUC CCG GGUAAA c uuuguua g
AACG         -   U      a -       c 

Annotation confidence High

Genome context

X: 122146174-122146242 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-224

Mature cfa-miR-224-5p

• Accession: MIMAT0006744
• Description: Canis lupus familiaris cfa-miR-224-5p mature miRNA
• Sequence: 1 - CAAGUCACUAGUGGUUCCGUUUAG - 24
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-224-3p

• Accession: MIMAT0051864
• Description: Canis lupus familiaris cfa-miR-224-3p mature miRNA
• Sequence: 47 - AAAUGGUGCCCUAGUGACUGCAA - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415