miRBase entry: cfa-mir-224

Stem-loop cfa-mir-224

Accession

MI0008168

Description

Canis familiaris cfa-mir-224 precursor miRNA

Gene family

MIPF0000088; mir-224

Sequence

CAAGUCACUAGUGGUUCCGUUUaguagaugauuaugcauuguuucaaaauggugcccuagugacugcaa
..(((((((((.(((.((((((.(.(((((((.....)))))))).)))))).))))))))))))....

Structure

--CA         U   U      a u       u 
    AGUCACUAG GGU CCGUUU g agaugau a
    ||||||||| ||| |||||| | ||||||| u
    ucagugauc ccg gguaaa c uuuguua g
aacg         -   u      a -       c

Annotation confidence Not enough data

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Genome context

chrX: 119925345-119925413 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-224

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-224

Accession	MIMAT0006744
Description	Canis familiaris cfa-miR-224 mature miRNA
Sequence	1 - CAAGUCACUAGUGGUUCCGUUU - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415