Stem-loop cfa-mir-424

Accession

MI0008169

Description

Canis lupus familiaris cfa-mir-424 precursor miRNA

Literature search

5 open access papers mention cfa-mir-424
(9 sentences)

Sequence

3206 reads, 15.0 reads per million, 81 experiments

AGCAGCAAUUCAUGUUUUGAAgugcuuuaaaugguuCAAAACGUGAGGCGCUGCUAU
((((((..((((((((((((...(((......)))))))))))))))..))))))..

Structure

--      AA            Agu   uu 
  AGCAGC  UUCAUGUUUUGA   gcu  a
  ||||||  ||||||||||||   |||   
  UCGUCG  GAGUGCAAAACu   ugg  a
UA      CG            ---   ua 

Annotation confidence High

Genome context

chrX: 105183437-105183493 [-]

Mature cfa-miR-424-5p

• Accession: MIMAT0051865
• Description: Canis lupus familiaris cfa-miR-424-5p mature miRNA
• Sequence: 1 - AGCAGCAAUUCAUGUUUUGAA - 21
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-424-3p

• Accession: MIMAT0006745
• Description: Canis lupus familiaris cfa-miR-424-3p mature miRNA
• Sequence: 37 - CAAAACGUGAGGCGCUGCUAU - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415