Stem-loop cfa-mir-503

Accession

MI0008170

Description

Canis lupus familiaris cfa-mir-503 precursor miRNA

Literature search

2 open access papers mention cfa-mir-503
(2 sentences)

Sequence

11462 reads, 27.0 reads per million, 78 experiments

UAGCAGCGGGAACAGUACUGCAGugggcaaucgguguucuGGAGUAUUGUUUCUGCUGCCCGG
..(((((((((((((((((.(((.(.((.....)).).))).)))))))))))))))))....

Structure

--UA                 G   u g  a 
    GCAGCGGGAACAGUACU CAG g gc a
    ||||||||||||||||| ||| | || u
    CGUCGUCUUUGUUAUGA Guc u ug c
GGCC                 G   u g  g 

Annotation confidence High

Genome context

X: 107042850-107042912 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cfa-mir-503

Mature cfa-miR-503-5p

• Accession: MIMAT0006746
• Description: Canis lupus familiaris cfa-miR-503-5p mature miRNA
• Sequence: 1 - UAGCAGCGGGAACAGUACUGCAG - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-503-3p

• Accession: MIMAT0051866
• Description: Canis lupus familiaris cfa-miR-503-3p mature miRNA
• Sequence: 41 - GGAGUAUUGUUUCUGCUGCCCGG - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415