Stem-loop cfa-mir-542

Accession

MI0008171

Description

Canis lupus familiaris cfa-mir-542 precursor miRNA

Literature search

2 open access papers mention cfa-mir-542
(2 sentences)

Sequence

99040 reads, 386.0 reads per million, 82 experiments

UCGGGGAUCAUCAUGUCACGAgauaccacugugcacuUGUGACAGAUUGAUAACUGAAA
((((..((((...(((((((((.(((....)))..)))))))))...))))..))))..

Structure

--    GG    UCA         -a   c 
  UCGG  AUCA   UGUCACGAg  uac a
  ||||  ||||   |||||||||  |||  
  AGUC  UAGU   ACAGUGUuc  gug c
AA    AA    UAG         ac   u 

Annotation confidence High

Genome context

X: 107038111-107038169 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cfa-mir-542

Mature cfa-miR-542-5p

• Accession: MIMAT0051867
• Description: Canis lupus familiaris cfa-miR-542-5p mature miRNA
• Sequence: 1 - UCGGGGAUCAUCAUGUCACGA - 21
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-542-3p

• Accession: MIMAT0006747
• Description: Canis lupus familiaris cfa-miR-542-3p mature miRNA
• Sequence: 38 - UGUGACAGAUUGAUAACUGAAA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415