Stem-loop cfa-mir-450b

Accession

MI0008172

Description

Canis lupus familiaris cfa-mir-450b precursor miRNA

Literature search

3 open access papers mention cfa-mir-450b
(19 sentences)

Sequence

144230 reads, 259.0 reads per million, 79 experiments

UUUUGCAAUAUGUUCCUGAAUAuguaauauaaGUGUAUUGGGAACAUUUUGCAUCCau
...(((((.((((((((((((((.........)))).)))))))))).))))).....

Structure

--UUU     U          -    gua 
     UGCAA AUGUUCCUGA AUAu   a
     ||||| |||||||||| ||||   u
     ACGUU UACAAGGGUU UGUG   a
uaCCU     U          A    aau 

Annotation confidence High

Genome context

X: 107037039-107037096 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cfa-mir-450b

Mature cfa-miR-450b-5p

• Accession: MIMAT0006748
• Description: Canis lupus familiaris cfa-miR-450b-5p mature miRNA
• Sequence: 1 - UUUUGCAAUAUGUUCCUGAAUA - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-450b-3p

• Accession: MIMAT0051868
• Description: Canis lupus familiaris cfa-miR-450b-3p mature miRNA
• Sequence: 33 - GUGUAUUGGGAACAUUUUGCAUCC - 56
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415