miRBase entry: cfa-mir-450b

Stem-loop cfa-mir-450b

Accession

MI0008172

Description

Canis familiaris cfa-mir-450b precursor miRNA

Sequence

UUUUGCAAUAUGUUCCUGAAUauguaauauaaguguauugggaacauuuugcauccau
...(((((.((((((((((((((.........)))).)))))))))).))))).....

Structure

--UUU     U          -    gua 
     UGCAA AUGUUCCUGA AUau   a
     ||||| |||||||||| ||||   u
     acguu uacaaggguu ugug   a
uaccu     u          a    aau

Annotation confidence Not enough data

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Genome context

chrX: 105177287-105177344 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from cfa-mir-450b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-450b

Accession	MIMAT0006748
Description	Canis familiaris cfa-miR-450b mature miRNA
Sequence	1 - UUUUGCAAUAUGUUCCUGAAU - 21
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415