Stem-loop cfa-mir-92a-2

Accession

MI0008175

Description

Canis lupus familiaris cfa-mir-92a-2 precursor miRNA

Literature search

1 open access papers mention cfa-mir-92a-2
(1 sentences)

Sequence

6610772 reads, 8351.0 reads per million, 82 experiments

GGGUGGGGAUUUGUGGCAUUACUuguguuccauauaaagUAUUGCACUUGUCCCGGCCUGU
((((.(((((..(((.((.(((((((((...)))).))))).)))))..))))).))))..

Structure

--    G     UU   G  U     -    u 
  GGGU GGGAU  GUG CA UACUu gugu  
  |||| |||||  ||| || ||||| |||| c
  UCCG CCCUG  CAC GU AUgaa uaua  
UG    G     UU   -  U     a    c 

Annotation confidence High

Genome context

X: 106755582-106755642 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cfa-mir-92a-2

Mature cfa-miR-92a-2-5p

• Accession: MIMAT0051768
• Description: Canis lupus familiaris cfa-miR-92a-2-5p mature miRNA
• Sequence: 1 - GGGUGGGGAUUUGUGGCAUUACU - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-92a-3p

• Accession: MIMAT0006653
• Description: Canis lupus familiaris cfa-miR-92a-3p mature miRNA
• Sequence: 40 - UAUUGCACUUGUCCCGGCCUGU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415