Stem-loop cfa-mir-374a

Accession

MI0008179

Description

Canis lupus familiaris cfa-mir-374a precursor miRNA

Literature search

2 open access papers mention cfa-mir-374a
(2 sentences)

Sequence

438313 reads, 650.0 reads per million, 81 experiments

UUAUAAUACAACCUGAUAAGUGuuguagcaCUUACCAGGUUGUAUUGUAAUU
(((((((((((((((.(((((((....))))))).)))))))))))))))..

Structure

--               A       u 
  UUAUAAUACAACCUG UAAGUGu g
  ||||||||||||||| |||||||  
  AAUGUUAUGUUGGAC AUUCacg u
UU               C       a 

Annotation confidence High

Genome context

X: 58804747-58804798 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-374a

Mature cfa-miR-374a-5p

• Accession: MIMAT0006753
• Description: Canis lupus familiaris cfa-miR-374a-5p mature miRNA
• Sequence: 1 - UUAUAAUACAACCUGAUAAGUG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-374a-3p

• Accession: MIMAT0051873
• Description: Canis lupus familiaris cfa-miR-374a-3p mature miRNA
• Sequence: 31 - CUUACCAGGUUGUAUUGUAAUU - 52
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415