Stem-loop cfa-mir-374b

Accession

MI0008180

Description

Canis lupus familiaris cfa-mir-374b precursor miRNA

Literature search

1 open access papers mention cfa-mir-374b
(1 sentences)

Sequence

251489 reads, 281.0 reads per million, 82 experiments

AUAUAAUACAACCUGCUAAGUGuccuagcaCUUAUCAGGUUGUAUUAUCAUU
..(((((((((((((.(((((((....))))))).)))))))))))))....

Structure

--AU             C       c 
    AUAAUACAACCUG UAAGUGu c
    ||||||||||||| |||||||  
    UAUUAUGUUGGAC AUUCacg u
UUAC             U       a 

Annotation confidence High

Genome context

X: 58764565-58764616 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-374b

Mature cfa-miR-374b-5p

• Accession: MIMAT0006754
• Description: Canis lupus familiaris cfa-miR-374b-5p mature miRNA
• Sequence: 1 - AUAUAAUACAACCUGCUAAGUG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-374b-3p

• Accession: MIMAT0051874
• Description: Canis lupus familiaris cfa-miR-374b-3p mature miRNA
• Sequence: 31 - CUUAUCAGGUUGUAUUAUCAUU - 52
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415