Stem-loop cfa-mir-421

Accession

MI0008181

Description

Canis lupus familiaris cfa-mir-421 precursor miRNA

Literature search

1 open access papers mention cfa-mir-421
(1 sentences)

Sequence

38054 reads, 91.0 reads per million, 80 experiments

CUCAUUAAAUGUUUGUUGAAUGAaaaaaugaaucAUCAACAGACAUUAAUUGGGCG
((((...((((((((((((.(((.........)))))))))))))))...))))..

Structure

--    UUA            A   aaa 
  CUCA   AAUGUUUGUUGA UGA   a
  ||||   |||||||||||| |||   a
  GGGU   UUACAGACAACU Acu   u
GC    UAA            -   aag 

Annotation confidence High

Genome context

X: 58764403-58764458 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-421

Mature cfa-miR-421-5p

• Accession: MIMAT0051875
• Description: Canis lupus familiaris cfa-miR-421-5p mature miRNA
• Sequence: 1 - CUCAUUAAAUGUUUGUUGAAUGA - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-421-3p

• Accession: MIMAT0006755
• Description: Canis lupus familiaris cfa-miR-421-3p mature miRNA
• Sequence: 35 - AUCAACAGACAUUAAUUGGGCG - 56
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415