Stem-loop cfa-mir-98

Accession

MI0008182

Description

Canis lupus familiaris cfa-mir-98 precursor miRNA

Literature search

7 open access papers mention cfa-mir-98
(18 sentences)

Sequence

461752 reads, 656.0 reads per million, 82 experiments

UGAGGUAGUAAGUUGUAUUGUUgugggguagggauuuuaggccccaauuagaagauaaCUAUACAACUUACUACUUUCCc
.(((((((((((((((((.((((((((((...........)))))).........)))).)))))))))))))))))...

Structure

--U                 U    ---------      aggg 
   GAGGUAGUAAGUUGUAU GUUg         uggggu    a
   ||||||||||||||||| ||||         ||||||    u
   UUUCAUCAUUCAACAUA Caau         accccg    u
cCC                 U    agaagauua      gauu 

Annotation confidence High

Genome context

X: 45578696-45578775 [-]

Mature cfa-miR-98-5p

• Accession: MIMAT0006756
• Description: Canis lupus familiaris cfa-miR-98-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAAGUUGUAUUGUU - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-98-3p

• Accession: MIMAT0051876
• Description: Canis lupus familiaris cfa-miR-98-3p mature miRNA
• Sequence: 59 - CUAUACAACUUACUACUUUCC - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415