Stem-loop cfa-mir-221

Accession

MI0008183

Description

Canis lupus familiaris cfa-mir-221 precursor miRNA

Literature search

22 open access papers mention cfa-mir-221
(31 sentences)

Sequence

657440 reads, 1218.0 reads per million, 82 experiments

ACCUGGCAUACAAUGUAGAUUUCuguguuuguugggcaacAGCUACAUUGUCUGCUGGGUUU
((((((((.(((((((((....((((((((...)))).))))))))))))).))))))))..

Structure

--        U         AUUU    -    g 
  ACCUGGCA ACAAUGUAG    Cugu guuu  
  |||||||| |||||||||    |||| |||| u
  UGGGUCGU UGUUACAUC    GAca cggg  
UU        C         ----    a    u 

Annotation confidence High

Genome context

X: 39655841-39655902 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-221

Mature cfa-miR-221-5p

• Accession: MIMAT0051877
• Description: Canis lupus familiaris cfa-miR-221-5p mature miRNA
• Sequence: 1 - ACCUGGCAUACAAUGUAGAUUUC - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-221-3p

• Accession: MIMAT0006757
• Description: Canis lupus familiaris cfa-miR-221-3p mature miRNA
• Sequence: 41 - AGCUACAUUGUCUGCUGGGUUU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415