Stem-loop cfa-mir-532

Accession

MI0008184

Description

Canis lupus familiaris cfa-mir-532 precursor miRNA

Literature search

8 open access papers mention cfa-mir-532
(10 sentences)

Sequence

1094398 reads, 975.0 reads per million, 82 experiments

CAUGCCUUGAGUGUAGGACCGUugguaucuuaauuacCCUCCCACACCCAAGGCUUGCA
((.((((((.((((.(((.....((((.......)))).))).)))).)))))).))..

Structure

--  U      A    A   CCGUu    uc 
  CA GCCUUG GUGU GGA     ggua  u
  || |||||| |||| |||     ||||  u
  GU CGGAAC CACA CCU     Ccau  a
AC  U      C    C   ----C    ua 

Annotation confidence High

Genome context

X: 42915510-42915568 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from cfa-mir-532

Mature cfa-miR-532-5p

• Accession: MIMAT0006758
• Description: Canis lupus familiaris cfa-miR-532-5p mature miRNA
• Sequence: 1 - CAUGCCUUGAGUGUAGGACCGU - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-532-3p

• Accession: MIMAT0051878
• Description: Canis lupus familiaris cfa-miR-532-3p mature miRNA
• Sequence: 38 - CCUCCCACACCCAAGGCUUGCA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415