Stem-loop cfa-mir-660

Accession

MI0008186

Description

Canis lupus familiaris cfa-mir-660 precursor miRNA

Literature search

2 open access papers mention cfa-mir-660
(2 sentences)

Sequence

112329 reads, 130.0 reads per million, 80 experiments

UACCCAUUGCAUAUCGGAGUUGUgaauucucaaagcACCUCCUGUGUGCAUGGAUUACA
...((((.((((((.((((.(((...........))).)))).))))))))))......

Structure

---UAC    U      C    U   gaau 
      CCAU GCAUAU GGAG UGU    u
      |||| |||||| |||| |||    c
      GGUA CGUGUG CCUC Acg    u
ACAUUA    -      U    C   aaac 

Annotation confidence High

Genome context

X: 42924799-42924857 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from cfa-mir-660

Mature cfa-miR-660-5p

• Accession: MIMAT0006760
• Description: Canis lupus familiaris cfa-miR-660-5p mature miRNA
• Sequence: 1 - UACCCAUUGCAUAUCGGAGUUGU - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-660-3p

• Accession: MIMAT0051880
• Description: Canis lupus familiaris cfa-miR-660-3p mature miRNA
• Sequence: 37 - ACCUCCUGUGUGCAUGGAUUACA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415