Stem-loop cfa-mir-502

Accession

MI0008187

Description

Canis lupus familiaris cfa-mir-502 precursor miRNA

Sequence

254772 reads, 382.0 reads per million, 82 experiments

AAUCCUUGCUAUCUGGGUGCUAGUgcugucucaaugcAAUGCACCUGGGCAAGGAUUCA
(((((((((...((((((((...(((.........)))..)))))))))))))))))..

Structure

--         UAU        UAG   ugu 
  AAUCCUUGC   CUGGGUGC   Ugc   c
  |||||||||   ||||||||   |||   u
  UUAGGAACG   GGUCCACG   Acg   c
AC         ---        -UA   uaa 

Annotation confidence High

Genome context

X: 42926473-42926531 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from cfa-mir-502

Mature cfa-miR-502-5p

• Accession: MIMAT0051881
• Description: Canis lupus familiaris cfa-miR-502-5p mature miRNA
• Sequence: 1 - AAUCCUUGCUAUCUGGGUGCUAGU - 24
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-502-3p

• Accession: MIMAT0006761
• Description: Canis lupus familiaris cfa-miR-502-3p mature miRNA
• Sequence: 38 - AAUGCACCUGGGCAAGGAUUCA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415