Stem-loop cfa-mir-676

Accession

MI0008188

Description

Canis lupus familiaris cfa-mir-676 precursor miRNA

Literature search

1 open access papers mention cfa-mir-676
(1 sentences)

Sequence

24116 reads, 41.0 reads per million, 82 experiments

CUCUUCAAUCUCAGGACUCGCAgaauuaauggaaugCCGUCCUAAGGUUGGUGAGUU
(((.(((((((.(((((..(((............))).))))).))))))).)))..

Structure

--   U       C     UC   gaauu 
  CUC UCAAUCU AGGAC  GCA     a
  ||| ||||||| |||||  |||      
  GAG GGUUGGA UCCUG  Cgu     a
UU   U       A     -C   aaggu 

Annotation confidence High

Genome context

X: 55462037-55462093 [+]

Mature cfa-miR-676-5p

• Accession: MIMAT0006762
• Description: Canis lupus familiaris cfa-miR-676-5p mature miRNA
• Sequence: 1 - CUCUUCAAUCUCAGGACUCGCA - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-676-3p

• Accession: MIMAT0051882
• Description: Canis lupus familiaris cfa-miR-676-3p mature miRNA
• Sequence: 37 - CCGUCCUAAGGUUGGUGAGUU - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415