Stem-loop cel-mir-1829b

Accession

MI0008198

Description

Caenorhabditis elegans cel-mir-1829b precursor miRNA mir-1829

Gene
family

RF00955; mir-1829

Literature search

1 open access papers mention cel-mir-1829b
(1 sentences)

Sequence

42122 reads, 436 reads per million, 16 experiments

AAGCGAUCUUCUAGAUGGUUGUAaaacaucgaguauuaCAACCACUGGAAUUUCUCUAUU
.((.((..((((((.(((((((((.((.....)).)))))))))))))))..)).))...

Structure

--A  C  UC      A         a  a 
   AG GA  UUCUAG UGGUUGUAa ac u
   || ||  |||||| ||||||||| || c
   UC CU  AAGGUC ACCAACauu ug g
UUA  U  UU      -         a  a 

Annotation confidence Medium

Genome context

chrX: 14977119-14977178 [+]

Mature cel-miR-1829b-5p

• Accession: MIMAT0006770
• Description: Caenorhabditis elegans cel-miR-1829b-5p mature miRNA
• Sequence: 1 - AAGCGAUCUUCUAGAUGGUUGUA - 23
• Evidence: experimental ; 454 [1], Illumina [2], CLIPseq [3]

Mature cel-miR-1829b-3p

• Accession: MIMAT0032037
• Description: Caenorhabditis elegans cel-miR-1829b-3p mature miRNA
• Sequence: 39 - CAACCACUGGAAUUUCUCUAUU - 60
• Evidence: not_experimental

References

1. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


2. PubMed ID: 20062054
   Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
   "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
   "Nat Struct Mol Biol (2010) 17:173-179


3. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415