Stem-loop cel-mir-1832a

Accession

MI0008202

Description

Caenorhabditis elegans cel-mir-1832a precursor miRNA

Sequence

6611 reads, 34 reads per million, 14 experiments

CAGCGAUUCGAACUCCGCCCACUgcaccugauugguugacaagUGGGCGGAGCGAAUCGAUGAU
((.(((((((..((((((((((((((((.....)).)).).)))))))))))))))))).))..

Structure

--  G       AA           - -  -  u 
  CA CGAUUCG  CUCCGCCCACU g ca cc g
  || |||||||  ||||||||||| | || || a
  GU GCUAAGC  GAGGCGGGUga c gu gg u
UA  A       --           a a  u  u 

Annotation confidence High

Genome context

chrIII: 11829248-11829311 [+]

Mature cel-miR-1832a-3p

• Accession: MIMAT0006774
• Description: Caenorhabditis elegans cel-miR-1832a-3p mature miRNA
• Sequence: 44 - UGGGCGGAGCGAAUCGAUGAU - 64
• Evidence: experimental ; 454 [1], Illumina [2]

Mature cel-miR-1832a-5p

• Accession: MIMAT0032039
• Description: Caenorhabditis elegans cel-miR-1832a-5p mature miRNA
• Sequence: 1 - CAGCGAUUCGAACUCCGCCCACU - 23
• Evidence: not_experimental

References

1. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


2. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415