Stem-loop ssc-mir-185

Accession

MI0008218

Description

Sus scrofa ssc-mir-185 precursor miRNA

Literature search

16 open access papers mention ssc-mir-185
(31 sentences)

Sequence

4970201 reads, 2461.0 reads per million, 213 experiments

ggugagggauUGGAGAGAAAGGCAGUUCCUGAugguccccuccccAGGGGCUGGCUUUCCUCUGGUccuucccucc
((.((((((((((((.(((((.(((((((((..((......)).))))))))).)))))))))))))))))))...

Structure

---  u            A     G         Au  uc 
   gg gagggauUGGAG GAAAG CAGUUCCUG  gg  c
   || |||||||||||| ||||| |||||||||  ||   
   cc cuuccUGGUCUC CUUUC GUCGGGGAc  cc  c
ccu  -            -     G         -c  uc 

Annotation confidence High

Genome context

chr14: 55086524-55086599 [+]

Mature ssc-miR-185-5p

• Accession: MIMAT0007759
• Description: Sus scrofa ssc-miR-185-5p mature miRNA
• Sequence: 11 - UGGAGAGAAAGGCAGUUCCUGA - 32
• Evidence: experimental ; cloned [1], Illumina [2-4]

Mature ssc-miR-185-3p

• Accession: MIMAT0052594
• Description: Sus scrofa ssc-miR-185-3p mature miRNA
• Sequence: 46 - AGGGGCUGGCUUUCCUCUGGU - 66
• Evidence: experimental ; cloned [1], Illumina [2-4]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 18548309
   Identification and characterization of new microRNAs from pig
   "Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS"
   "Mamm Genome (2008) 19:570-580


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100