Stem-loop ssc-mir-221

Accession

MI0008221

Description

Sus scrofa ssc-mir-221 precursor miRNA

Literature search

68 open access papers mention ssc-mir-221
(164 sentences)

Sequence

2395952 reads, 1746.0 reads per million, 214 experiments

ugaACCUGGCAUACAAUGUAGAUUUcuguguuuguugggcaacAGCUACAUUGUCUGCUGGGUUUcaggc
.((((((((((.(((((((((....((((((((...)))).))))))))))))).)))))))))).....

Structure

----u          U         AUUU    -    g 
     gaACCUGGCA ACAAUGUAG    cugu guuu  
     |||||||||| |||||||||    |||| |||| u
     UUUGGGUCGU UGUUACAUC    GAca cggg  
cggac          C         ----    a    u 

Annotation confidence High

Genome context

chrX: 45274873-45274942 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-221

Mature ssc-miR-221-5p

• Accession: MIMAT0022949
• Description: Sus scrofa ssc-miR-221-5p mature miRNA
• Sequence: 4 - ACCUGGCAUACAAUGUAGAUUU - 25
• Evidence: experimental ; Illumina [3]

Mature ssc-miR-221-3p

• Accession: MIMAT0007762
• Description: Sus scrofa ssc-miR-221-3p mature miRNA
• Sequence: 44 - AGCUACAUUGUCUGCUGGGUUU - 65
• Evidence: experimental ; cloned [1], Illumina [2-4]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 18548309
   Identification and characterization of new microRNAs from pig
   "Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS"
   "Mamm Genome (2008) 19:570-580


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100