Stem-loop osa-MIR1848

Accession

MI0008225

Description

Oryza sativa osa-MIR1848 precursor miRNA

Literature search

9 open access papers mention osa-MIR1848
(15 sentences)

Sequence

58196 reads, 234.0 reads per million, 138 experiments

ccgcgggcccCCUCGCCGGCGCGCGCGUGCAggugugCGCGCGGCCGUCGAGUGGCUCcuagg
((..(((((..((((.((((.(((((((((....))))))))))))).)))).)))))...))

Structure

  -gc     cC    C    G         A 
cc   gggcc  CUCG CGGC CGCGCGUGC g
||   |||||  |||| |||| |||||||||  
gg   CUCGG  GAGC GCCG GCGCGCgug g
  auc     -U    U    -         u 

Annotation confidence Medium

Genome context

4: 18131807-18131869 [+]

Mature osa-miR1848-5p

• Accession: MIMAT0007768
• Description: Oryza sativa osa-miR1848-5p mature miRNA
• Sequence: 11 - CCUCGCCGGCGCGCGCGUGCA - 31
• Evidence: experimental ; 454 [1]

Mature osa-miR1848-3p

• Accession: MIMAT0056040
• Description: Oryza sativa osa-miR1848-3p mature miRNA
• Sequence: 38 - CGCGCGGCCGUCGAGUGGCUC - 58
• Evidence: experimental ; unknown

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465