Stem-loop osa-MIR1849

Accession

MI0008226

Description

Oryza sativa osa-MIR1849 precursor miRNA

Literature search

2 open access papers mention osa-MIR1849
(2 sentences)

Sequence

140779 reads, 536.0 reads per million, 142 experiments

aaauaagcuaACCUAGGAUAUGAUGGGACAUUACCUaucuagauucguuguacuagguAAUGCCCUAUCGUAUCCUAGGUUGguuuauuu
(((((((((((((((((((((((((((.(((((((((..((.(.....).)).))))))))).)))))))))))))))))))))))))))

Structure

                           A         uc  g u 
aaauaagcuaACCUAGGAUAUGAUGGG CAUUACCUa  ua a u
||||||||||||||||||||||||||| |||||||||  || | c
uuuauuugGUUGGAUCCUAUGCUAUCC GUAAuggau  au u g
                           C         -c  g u 

Annotation confidence Medium

Genome context

4: 22224813-22224902 [+]

Mature osa-miR1849-5p

• Accession: MIMAT0056041
• Description: Oryza sativa osa-miR1849-5p mature miRNA
• Sequence: 11 - ACCUAGGAUAUGAUGGGACAUUACCU - 36
• Evidence: experimental ; unknown

Mature osa-miR1849-3p

• Accession: MIMAT0007769
• Description: Oryza sativa osa-miR1849-3p mature miRNA
• Sequence: 59 - AAUGCCCUAUCGUAUCCUAGGUUG - 82
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435


2. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465