Stem-loop osa-MIR1850

Accession

MI0008227

Description

Oryza sativa osa-MIR1850 precursor miRNA

Literature search

7 open access papers mention osa-MIR1850
(15 sentences)

Sequence

540 reads, 379 reads per million, 2 experiments

augugauggagaugcgaUGGAAAGUUGGGAGAUUGGGGgaagUUGUGUGUGAACUAAACGUGGauuggggccCUGUUUAGUUCACAUCAAUCUUccuccaaauucccaacuuuucaucacaucacaaucacau
(((((((...((((.((((((((((((((((.(((((((((((((.((((((((((((((.((........))))))))))))))))))).)))))))))).)))))))))))))))).))))...)))))))

Structure

       gga    c                A          -   U              U  auu 
augugau   gaug gaUGGAAAGUUGGGAG UUGGGGgaag UUG GUGUGAACUAAACG GG   g
|||||||   |||| |||||||||||||||| |||||||||| ||| |||||||||||||| ||    
uacacua   cuac cuacuuuucaacccuu aaccuccUUC AAC UACACUUGAUUUGU Cc   g
       aca    a                a          U   -              -  cgg 

Annotation confidence Not enough data

Genome context

Chr5: 26275207-26275339 [-]

Mature osa-miR1850.1

• Accession: MIMAT0007770
• Description: Oryza sativa osa-miR1850.1 mature miRNA
• Sequence: 18 - UGGAAAGUUGGGAGAUUGGGG - 38
• Evidence: experimental ; 454 [1], Illumina [3]

Mature osa-miR1850.2

• Accession: MIMAT0009210
• Description: Oryza sativa osa-miR1850.2 mature miRNA
• Sequence: 43 - UUGUGUGUGAACUAAACGUGG - 63
• Evidence: experimental ; Illumina [2-3]

Mature osa-miR1850.3

• Accession: MIMAT0009211
• Description: Oryza sativa osa-miR1850.3 mature miRNA
• Sequence: 73 - CUGUUUAGUUCACAUCAAUCUU - 94
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435


2. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465


3. PubMed ID: 19103661
   Characterization and expression profiles of miRNAs in rice seeds
   "Xue LJ, Zhang JJ, Xue HW"
   "Nucleic Acids Res (2009) 37:916-930