Stem-loop osa-MIR1851

Accession

MI0008228

Description

Oryza sativa osa-MIR1851 precursor miRNA

Literature search

1 open access papers mention osa-MIR1851
(1 sentences)

Sequence

68340 reads, 283.0 reads per million, 142 experiments

cagagugucuucgccaaaaugccaucccgaacagaaaugccacuuccucuucuuccuccAUCCUGCGCGUGAAGAGCUCGccugcggccauggcuagcucccucccugccaucgccgccgcacgggcagcggagcccgcggcgcaguggcgacucuucgguugacggcggcuggcuacgcgguggcaacgaggaggcggcggcggccaggagcugcuccaccggccccacgcgcacgcgcgccggcgggauccgcgcgucgucgccggaguccuuccgcgacgaccucagcugcacaggcguuggcggggauggcagggagggcagcgccccgaucgccgucggcaaggcggcaucggcgcggcgguggagauggccauggccgccggcgAGCUCUUCACGCGCGGGACGGAGGaagaagaagagccaggggcauuuccgucugggauggcauuuuggcgaagacaccugg
(((.(((((((((((((((((((((((((.((.((((((((.((((.((((((((((((.((((((((((((((((((((((.(((((((((((((.((((((((((((((((.((((((.((..((.(((((.((((((((((.((((((.....(((((.((((((..(((((..(((.((.((.........)).)).))))))))..)))).)).))))).....))).)))..))))).))))).)))))))((((((((.(((.....)))))))))))....(((.....))))))))))).))))))))))))).((.(((((((((.((((((.....)))))))))))...)))).))))).))))))))))))).)))))))))))))))))))))).)))))))))))).))...)).)))))))).)).)))))))))))))))))))))))))))).

Structure

-   a                         a  a        a  ---  c            A                      u             g   ----------------------------------------------             g      c  -----------------------------------------gg  a     g     -     -a   -   acucu     u  -    gg     ua   g  g  aac 
 cag gugucuucgccaaaaugccaucccg ac gaaaugcc cu   uc ucuucuuccucc UCCUGCGCGUGAAGAGCUCGcc gcggccauggcua cuc                                              ccucccugccauc ccgccg ac                                           gc gcgga cccgc ggcgc  gug gcg     ucggu ga cggc  cuggc  cgc gu gc   g
 ||| ||||||||||||||||||||||||| || |||||||| ||   || |||||||||||| |||||||||||||||||||||| ||||||||||||| |||                                              ||||||||||||| |||||| ||                                           || ||||| ||||| |||||  ||| |||     ||||| || ||||  |||||  ||| || ||   a
 guc cacagaagcgguuuuacgguagggu ug cuuuacgg ga   ag agaagaaGGAGG AGGGCGCGCACUUCUCGAgcgg cgccgguaccggu gag                                              ggagggacgguag ggcggu ug                                           cg cgccu gggcg ccgcg  cac cgc     ggcca cu gucg  gaccg  gcg cg cg   g
g   -                         c  c        g  ccg  a            C                      c             a   guggcggcgcggcuacggcggaacggcugccgcuagccccgcgacg             g      -  cggacacgucgacuccagcagcgccuuccugaggccgcugcug  -     a     g     cg   g   acccc     c  c    ag     --   g  g  gag 

Annotation confidence Medium

Genome context

5: 26049315-26049785 [+]

Mature osa-miR1851-5p

• Accession: MIMAT0056042
• Description: Oryza sativa osa-miR1851-5p mature miRNA
• Sequence: 60 - AUCCUGCGCGUGAAGAGCUCG - 80
• Evidence: experimental ; unknown

Mature osa-miR1851-3p

• Accession: MIMAT0007771
• Description: Oryza sativa osa-miR1851-3p mature miRNA
• Sequence: 391 - AGCUCUUCACGCGCGGGACGGAGG - 414
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465