Stem-loop osa-MIR1852

Accession

MI0008229

Description

Oryza sativa osa-MIR1852 precursor miRNA

Literature search

3 open access papers mention osa-MIR1852
(4 sentences)

Sequence

2328 reads, 9.0 reads per million, 88 experiments

uagacUAACUACCCCUGCAUUCAGAAUucauauagcgauugaaaauugaacuccgugcacgguaguaguaguagucagaucuauuguuucuaaucaauugcuAUAUGGAUUCAGAAUGCAGGUguaguuuguuca
..(((.((((((.(((((((((.(((((((((((((((((((.......((((((....))).)))..((((((......)))))).......))))))))))))))))))).))))))))).)))))).)))..

Structure

ua   U      C         A                   --------------------aaauuga   -   u 
  gac AACUAC CCUGCAUUC GAAUucauauagcgauuga                           acu ccg g
  ||| |||||| ||||||||| |||||||||||||||||||                           ||| |||  
  uug uugaug GGACGUAAG CUUAGGUAUAucguuaacu                           uga ggc c
ac   u      U         A                   aaucuuuguuaucuagacugaugauga   u   a 

Annotation confidence Medium

Genome context

5: 20761025-20761159 [+]

Mature osa-miR1852-5p

• Accession: MIMAT0056043
• Description: Oryza sativa osa-miR1852-5p mature miRNA
• Sequence: 6 - UAACUACCCCUGCAUUCAGAAU - 27
• Evidence: experimental ; unknown

Mature osa-miR1852-3p

• Accession: MIMAT0007772
• Description: Oryza sativa osa-miR1852-3p mature miRNA
• Sequence: 103 - AUAUGGAUUCAGAAUGCAGGU - 123
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465