Stem-loop osa-MIR1853

Accession

MI0008230

Description

Oryza sativa osa-MIR1853 precursor miRNA

Literature search

2 open access papers mention osa-MIR1853
(2 sentences)

Sequence

8538 reads, 71.0 reads per million, 74 experiments

cgcaacuUCGAGCAUUCAAACAUUCCCAauuaccaucgccucccuaaacagcaauggUAAUUGGGGAUGUUCGGUUGCucgagguugcg
((((((((((((((.((.((((((((((((((((((.((...........)).)))))))))))))))))).)).))))))))))))))

Structure

              U  A                  c  cucc 
cgcaacuUCGAGCA UC AACAUUCCCAauuaccau gc    c
|||||||||||||| || |||||||||||||||||| ||    u
gcguuggagcuCGU GG UUGUAGGGGUUAAUggua cg    a
              U  C                  a  acaa 

Annotation confidence Medium

Genome context

8: 3689091-3689179 [-]

Mature osa-miR1853-5p

• Accession: MIMAT0007773
• Description: Oryza sativa osa-miR1853-5p mature miRNA
• Sequence: 8 - UCGAGCAUUCAAACAUUCCCA - 28
• Evidence: experimental ; 454 [1]

Mature osa-miR1853-3p

• Accession: MIMAT0007774
• Description: Oryza sativa osa-miR1853-3p mature miRNA
• Sequence: 58 - UAAUUGGGGAUGUUCGGUUGC - 78
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465