Stem-loop osa-MIR1854

Accession

MI0008231

Description

Oryza sativa osa-MIR1854 precursor miRNA

Sequence

15169 reads, 144.0 reads per million, 96 experiments

cguuuuaaauggugaaauuUGUAGAUUGGAGGGUAACCCUagaaccccauuuuugcccaaauuugugauuuucaacauccaauuUGGGGAUUUGCUGAUUAUAGUGCU
.((.((((((.(..((((((.(((((((((((((((................)))))).....(((........)))))))))))).))))))..).))).))).)).

Structure

c  u   -   g ug      G         -------------------      CCCUaga 
 gu uua aau g  aaauuU UAGAUUGGA                   GGGUAA       a
 || ||| ||| |  |||||| |||||||||                   ||||||        
 CG GAU UUA U  UUUAGG GUuuaaccu                   cccguu       c
U  U   A   G CG      G         acaacuuuuaguguuuaaa      uuuaccc 

Annotation confidence Low

Genome context

8: 7858365-7858472 [-]

Mature osa-miR1854-5p

• Accession: MIMAT0007775
• Description: Oryza sativa osa-miR1854-5p mature miRNA
• Sequence: 20 - UGUAGAUUGGAGGGUAACCCU - 40
• Evidence: experimental ; 454 [1]

Mature osa-miR1854-3p

• Accession: MIMAT0007776
• Description: Oryza sativa osa-miR1854-3p mature miRNA
• Sequence: 85 - UGGGGAUUUGCUGAUUAUAGUGCU - 108
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465