miRBase entry: osa-MIR1854

Stem-loop osa-MIR1854


Accession
MI0008231
Description
Oryza sativa osa-MIR1854 precursor miRNA


Sequence

2 reads, 3 reads per million, 1 experiments
cguuuuaaaUGGUGAAAUUUGUAGAUUGGAggguaacccuagaaccccauuuuugcccaaauuugugauuuucaacaUCCAAUUUGGGGAUUUGCUGAUuauagugcu
.((.((((((.(..((((((.(((((((((((((((................)))))).....(((........)))))))))))).))))))..).))).))).)).

Structure
c  u   -   G UG      G         -------------------      cccuaga 
 gu uua aaU G  AAAUUU UAGAUUGGA                   ggguaa       a
 || ||| ||| |  |||||| |||||||||                   ||||||        
 cg gau uUA U  UUUAGG GUUUAACCU                   cccguu       c
u  u   a   G CG      G         acaacuuuuaguguuuaaa      uuuaccc 


Annotation confidence Not enough data
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Genome context
Chr8: 7858365-7858472 [-]

Database links

Mature osa-miR1854-5p

Accession MIMAT0007775
Description Oryza sativa osa-miR1854-5p mature miRNA
Sequence 10 - UGGUGAAAUUUGUAGAUUGGA - 30
Evidence experimental
454 [1]

Mature osa-miR1854-3p

Accession MIMAT0007776
Description Oryza sativa osa-miR1854-3p mature miRNA
Sequence 78 - UCCAAUUUGGGGAUUUGCUGAU - 99
Evidence experimental
454 [1]

References

  1. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465