Stem-loop osa-MIR1855

Accession

MI0008232

Description

Oryza sativa osa-MIR1855 precursor miRNA

Sequence

13144 reads, 85.0 reads per million, 82 experiments

ccuccccauuUCUUGGCCUCCUCUCGCUGCUCcugcuugugcucugagccccaacugcucaugcucgugcucaaggaggAGCACUGGAGUAGCCAAGAGAuggagugcga
.....((((((((((((...((((.(.(((((((.((((.((..(((((.............))))).)).)))).)))))))).))))..)))))))))))).......

Structure

--ccucc            CUC    C C       g    u  uc     cccaa 
       ccauuUCUUGGC   CUCU G UGCUCcu cuug gc  ugagc     c
       ||||||||||||   |||| | ||||||| |||| ||  |||||     u
       gguAGAGAACCG   GAGG C ACGAgga gaac cg  gcucg     g
agcguga            -AU    U -       g    u  -u     uacuc 

Annotation confidence Medium

Genome context

11: 21708971-21709080 [+]

Mature osa-miR1855-5p

• Accession: MIMAT0056044
• Description: Oryza sativa osa-miR1855-5p mature miRNA
• Sequence: 11 - UCUUGGCCUCCUCUCGCUGCUC - 32
• Evidence: experimental ; unknown

Mature osa-miR1855-3p

• Accession: MIMAT0007777
• Description: Oryza sativa osa-miR1855-3p mature miRNA
• Sequence: 80 - AGCACUGGAGUAGCCAAGAGA - 100
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465