Stem-loop osa-MIR1856

Accession

MI0008233

Description

Oryza sativa osa-MIR1856 precursor miRNA

Literature search

1 open access papers mention osa-MIR1856
(1 sentences)

Sequence

17064 reads, 84.0 reads per million, 125 experiments

agagcacugcUAUGCGUAAGACGGAUUCGUAcuaccugcguccgaccauaucaugugcaccgaucaccgucuuuagcuucucuccaccaaugcaagcagcauucggaugcaugucguacgAAUCCGUCGGACGCAUAGCUAuuuucuuu
((((....(((((((((..(((((((((((((.((.(((((((((.........((((...(((....)))....(((((...........).)))).))))))))))))).)).)))))))))))))..)))))))))....))))..

Structure

--    cacu         AA             u  c         ccauaucau    accgaucaccgucuuua    - ucuc 
  agag    gcUAUGCGU  GACGGAUUCGUAc ac ugcguccga         gugc                 gcuu c    c
  ||||    |||||||||  ||||||||||||| || |||||||||         ||||                 |||| |    a
  ucuu    CGAUACGCA  CUGCCUAAgcaug ug acguaggcu         uacg                 cgaa g    c
uu    uuAU         GG             c  u         ---------    ----------------a    c uaac 

Annotation confidence High

Genome context

11: 10376148-10376296 [-]

Mature osa-miR1856-5p

• Accession: MIMAT0007778
• Description: Oryza sativa osa-miR1856-5p mature miRNA
• Sequence: 11 - UAUGCGUAAGACGGAUUCGUA - 31
• Evidence: experimental ; 454 [1]

Mature osa-miR1856-3p

• Accession: MIMAT0056045
• Description: Oryza sativa osa-miR1856-3p mature miRNA
• Sequence: 121 - AAUCCGUCGGACGCAUAGCUA - 141
• Evidence: experimental ; unknown

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465