Stem-loop osa-MIR1857

Accession

MI0008234

Description

Oryza sativa osa-MIR1857 precursor miRNA

Literature search

3 open access papers mention osa-MIR1857
(8 sentences)

Sequence

29 reads, 20 reads per million, 2 experiments

guuuuuauccUGGUUUUUUUGGAGCAUGAGGuuaucucucaguuuuuccguguccaaaauaaaaggacaaaaacuguucuugaaaaccgagagauaaccUCAUGCUCCAAGAAAACCAGGauaaaaaauu
.(((((((((((((((((((((((((((((((((((((((.((((((...(((((.........)))))............)))))).)))))))))))))))))))))))))))))))))))))))...

Structure

--g                                       a      ---------ccg     aaa 
   uuuuuauccUGGUUUUUUUGGAGCAUGAGGuuaucucuc guuuuu            ugucc   a
   ||||||||||||||||||||||||||||||||||||||| ||||||            |||||   u
   aaaaauaGGACCAAAAGAACCUCGUACUccaauagagag caaaag            acagg   a
uua                                       c      uucuugucaaaa     aaa 

Annotation confidence Not enough data

Genome context

Chr11: 2733902-2734031 [+]

Mature osa-miR1857-5p

• Accession: MIMAT0007779
• Description: Oryza sativa osa-miR1857-5p mature miRNA
• Sequence: 11 - UGGUUUUUUUGGAGCAUGAGG - 31
• Evidence: experimental ; 454 [1], Illumina [2]

Mature osa-miR1857-3p

• Accession: MIMAT0007780
• Description: Oryza sativa osa-miR1857-3p mature miRNA
• Sequence: 100 - UCAUGCUCCAAGAAAACCAGG - 120
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435


2. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465