Stem-loop osa-MIR1858a

Accession

MI0008240

Description

Oryza sativa osa-MIR1858a precursor miRNA

Literature search

2 open access papers mention osa-MIR1858a
(2 sentences)

Sequence

53831 reads, 501.0 reads per million, 91 experiments

ucccgucaucgcugccggcaaagggagggggggugccgcaacaaggagaggaggacggAGUGGGGCGAGUGGAGCGUCAaaggggaugucaucgccgccgaaucugcucgugggacauccCCUUCGAUGCUCCACUCGCCCCaauccguccuccucuccuuguugcggcaccccccuucgcuggcagcgacgacggccuc
..(((((.(((((((((((.....(((((((((((((((((((((((((((((((((((.((((((((((((((((((.(((((((((((....((((.((......))))))))))))))))).)))))))))))))))))).)))))))))))))))))))))))))))))))))))))))))))))).)))))....

Structure

--uc     a           aaagg                                   G                  A           aucg    c  au 
    ccguc ucgcugccggc     gagggggggugccgcaacaaggagaggaggacggA UGGGGCGAGUGGAGCGUC aaggggauguc    ccgc ga  c
    ||||| |||||||||||     ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    |||| ||   
    ggcag agcgacggucg     cuuccccccacggcguuguuccucuccuccugccu aCCCCGCUCACCUCGUAG UUCCccuacag    ggug cu  u
cucc     c           -----                                   a                  C           ----    -  cg 

Annotation confidence Low

Genome context

9: 13536611-13536810 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from osa-MIR1858a

Mature osa-miR1858a-5p

• Accession: MIMAT0007786
• Description: Oryza sativa osa-miR1858a-5p mature miRNA
• Sequence: 59 - AGUGGGGCGAGUGGAGCGUCA - 79
• Evidence: experimental ; 454 [1]

Mature osa-miR1858a-3p

• Accession: MIMAT0056049
• Description: Oryza sativa osa-miR1858a-3p mature miRNA
• Sequence: 121 - CCUUCGAUGCUCCACUCGCCCC - 142
• Evidence: experimental ; unknown

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465