Stem-loop osa-MIR1858b

Accession

MI0008241

Description

Oryza sativa osa-MIR1858b precursor miRNA

Literature search

1 open access papers mention osa-MIR1858b
(1 sentences)

Sequence

35882 reads, 306.0 reads per million, 95 experiments

ucccgucaucgcugccggcaaaggggggggugccgcaacaaggagaggaggacggaguggggcAAGUGGAGCGUCAAAGGGGAUGUCaucgcugccgaaucugcuagugggacauccCCUUCGAUGCUCCACUCGCCCCaauauguccuccucuccuuguugcggcaccccccuucgcuggcagcgacgauggc
..(((((.(((((((((((...((((((((((((((((((((((((((((((((...((((((.(((((((((((.(((((((((((.(((((((.......)).)))))))))))))))).))))))))))).))))))...)))))))))))))))))))))))))))))))).))))))))))).))))).

Structure

uc     a           aaa                                gag      A           A           a     -  cg 
  ccguc ucgcugccggc   ggggggggugccgcaacaaggagaggaggacg   uggggc AGUGGAGCGUC AAGGGGAUGUC ucgcu gc  a
  ||||| |||||||||||   ||||||||||||||||||||||||||||||||   |||||| ||||||||||| ||||||||||| ||||| ||  a
  gguag agcgacggucg   uuccccccacggcguuguuccucuccuccugu   aCCCCG UCACCUCGUAG UUCCccuacag gguga cg  u
-c     c           --c                                aua      C           C           -     u  uc 

Annotation confidence Low

Genome context

9: 13194040-13194233 [+]

Mature osa-miR1858b-5p

• Accession: MIMAT0007787
• Description: Oryza sativa osa-miR1858b-5p mature miRNA
• Sequence: 64 - AAGUGGAGCGUCAAAGGGGAUGUC - 87
• Evidence: experimental ; 454 [1]

Mature osa-miR1858b-3p

• Accession: MIMAT0056050
• Description: Oryza sativa osa-miR1858b-3p mature miRNA
• Sequence: 118 - CCUUCGAUGCUCCACUCGCCCC - 139
• Evidence: experimental ; unknown

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465