Stem-loop osa-MIR1859

Accession

MI0008244

Description

Oryza sativa osa-MIR1859 precursor miRNA

Literature search

1 open access papers mention osa-MIR1859
(2 sentences)

Sequence

262076 reads, 521.0 reads per million, 128 experiments

gggaguuguaGGAAUGGAUGCGUAGAGAAAGAaaugaaaucugaaccagauuugugauuugauucUUUCCUAUGACGUCCAUUCCAAugauuuccag
(((((((((.(((((((((((((((.(((((((.(.(((((..............))))).))))))))))))).)))))))))).)))))))))..

Structure

--         a          -     A       a g     ugaacc 
  gggaguugu GGAAUGGAUG CGUAG GAAAGAa u aaauc      a
  ||||||||| |||||||||| ||||| ||||||| | |||||       
  ccuuuaguA CCUUACCUGC GUAUC CUUUcuu a uuuag      g
ga         A          A     -       - g     uguuua 

Annotation confidence High

Genome context

1: 673278-673374 [-]

Mature osa-miR1859-5p

• Accession: MIMAT0056051
• Description: Oryza sativa osa-miR1859-5p mature miRNA
• Sequence: 11 - GGAAUGGAUGCGUAGAGAAAGA - 32
• Evidence: experimental ; unknown

Mature osa-miR1859-3p

• Accession: MIMAT0007792
• Description: Oryza sativa osa-miR1859-3p mature miRNA
• Sequence: 66 - UUUCCUAUGACGUCCAUUCCAA - 87
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465


2. PubMed ID: 19103661
   Characterization and expression profiles of miRNAs in rice seeds
   "Xue LJ, Zhang JJ, Xue HW"
   "Nucleic Acids Res (2009) 37:916-930