Stem-loop osa-MIR1861d

Accession

MI0008250

Description

Oryza sativa osa-MIR1861d precursor miRNA

Literature search

8 open access papers mention osa-MIR1861d
(46 sentences)

Sequence

16988 reads, 84.0 reads per million, 136 experiments

uugcauauucuuaggccuggUCUUGAGGCAGGAACUGAGUAguuggugaacucgcucuauguuguucguucacucgcgacgCGGUUCCUGUCCCAAGACCGAGucugugaauauacaa
.((.((((((.(((((.((((((((.(((((((((((.((.((.(((((((..((........))..))))))).)).)).))))))))))).)))))))).))))).)))))).)).

Structure

u  c      u     c        A           A  A  u       uc  ucu 
 ug auauuc uaggc uggUCUUG GGCAGGAACUG GU gu ggugaac  gc   a
 || |||||| ||||| |||||||| ||||||||||| || || |||||||  ||    
 ac uauaag gucuG GCCAGAAC CUGUCCUUGGC ca cg ucacuug  ug   u
a  a      u     A        C           g  g  c       cu  uug 

Annotation confidence Medium

Genome context

4: 6536337-6536454 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR1861d

Mature osa-miR1861d-5p

• Accession: MIMAT0007799
• Description: Oryza sativa osa-miR1861d-5p mature miRNA
• Sequence: 21 - UCUUGAGGCAGGAACUGAGUA - 41
• Evidence: experimental ; 454 [1]

Mature osa-miR1861d-3p

• Accession: MIMAT0056055
• Description: Oryza sativa osa-miR1861d-3p mature miRNA
• Sequence: 82 - CGGUUCCUGUCCCAAGACCGAG - 103
• Evidence: experimental ; unknown

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465