Stem-loop osa-MIR1861f

Accession

MI0008252

Description

Oryza sativa osa-MIR1861f precursor miRNA

Literature search

8 open access papers mention osa-MIR1861f
(47 sentences)

Sequence

98 reads, 67 reads per million, 2 experiments

ugcguauucuuaggccCGAUCUUGAGGCAGGAACUGAGuaguuguugaacuugcucuauguuguucguucacccacuauucgguuccugucccaagaucgagucuaugaauauaca
((.((((((.(((((.((((((((.(((((((((((((((((.(.(((((..((........))..))))).).))))))))))))))))).)))))))).))))).)))))).))

Structure

  c      u     c        A                 u u     uu  ucu 
ug guauuc uaggc CGAUCUUG GGCAGGAACUGAGuagu g ugaac  gc   a
|| |||||| ||||| |||||||| ||||||||||||||||| | |||||  ||    
ac uauaag aucug gcuagaac cuguccuuggcuuauca c acuug  ug   u
  a      u     a        c                 c c     cu  uug 

Annotation confidence Not enough data

Genome context

Chr5: 18668398-18668513 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR1861f

Mature osa-miR1861f

• Accession: MIMAT0007801
• Description: Oryza sativa osa-miR1861f mature miRNA
• Sequence: 17 - CGAUCUUGAGGCAGGAACUGAG - 38
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465