Stem-loop osa-MIR1861f

Accession

MI0008252

Description

Oryza sativa osa-MIR1861f precursor miRNA

Literature search

8 open access papers mention osa-MIR1861f
(46 sentences)

Sequence

219057 reads, 1017.0 reads per million, 132 experiments

ugcguauucuuaggccCGAUCUUGAGGCAGGAACUGAGuaguuguugaacuugcucuauguuguucguucacccacuauuCGGUUCCUGUCCCAAGAUCGAGucuaugaauauaca
((.((((((.(((((.((((((((.(((((((((((((((((.(.(((((..((........))..))))).).))))))))))))))))).)))))))).))))).)))))).))

Structure

  c      u     c        A                 u u     uu  ucu 
ug guauuc uaggc CGAUCUUG GGCAGGAACUGAGuagu g ugaac  gc   a
|| |||||| ||||| |||||||| ||||||||||||||||| | |||||  ||    
ac uauaag aucuG GCUAGAAC CUGUCCUUGGCuuauca c acuug  ug   u
  a      u     A        C                 c c     cu  uug 

Annotation confidence High

Genome context

5: 18668398-18668513 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR1861f

Mature osa-miR1861f-5p

• Accession: MIMAT0007801
• Description: Oryza sativa osa-miR1861f-5p mature miRNA
• Sequence: 17 - CGAUCUUGAGGCAGGAACUGAG - 38
• Evidence: experimental ; 454 [1]

Mature osa-miR1861f-3p

• Accession: MIMAT0056057
• Description: Oryza sativa osa-miR1861f-3p mature miRNA
• Sequence: 81 - CGGUUCCUGUCCCAAGAUCGAG - 102
• Evidence: experimental ; unknown

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465