Stem-loop osa-MIR1861g

Accession

MI0008253

Description

Oryza sativa osa-MIR1861g precursor miRNA

Literature search

8 open access papers mention osa-MIR1861g
(46 sentences)

Sequence

85428 reads, 360.0 reads per million, 116 experiments

cgguguugcauauucuuaggcccagUCUUGUGGCAAGAACUGAGUAguucguuaacucgcuacguGGUUCUUGUCACAAGAUCGAGCcugugaauaugcaaaguugg
(((..((((((((((.(((((.(.((((((((((((((((((.(((((..........))))).)))))))))))))))))).).))))).))))))))))..))).

Structure

-   ug          u     c a                  A     ucgu 
 cgg  uugcauauuc uaggc c gUCUUGUGGCAAGAACUG GUAgu    u
 |||  |||||||||| ||||| | |||||||||||||||||| |||||     
 guu  aacguauaag gucCG G UAGAACACUGUUCUUGGu caucg    a
g   ga          u     A C                  g     cuca 

Annotation confidence Medium

Genome context

5: 18668611-18668717 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR1861g

Mature osa-miR1861g-5p

• Accession: MIMAT0007802
• Description: Oryza sativa osa-miR1861g-5p mature miRNA
• Sequence: 26 - UCUUGUGGCAAGAACUGAGUA - 46
• Evidence: experimental ; 454 [1]

Mature osa-miR1861g-3p

• Accession: MIMAT0056058
• Description: Oryza sativa osa-miR1861g-3p mature miRNA
• Sequence: 66 - GGUUCUUGUCACAAGAUCGAGC - 87
• Evidence: experimental ; unknown

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465