Stem-loop osa-MIR1861j

Accession

MI0008256

Description

Oryza sativa osa-MIR1861j precursor miRNA

Literature search

9 open access papers mention osa-MIR1861j
(48 sentences)

Sequence

412881 reads, 1584.0 reads per million, 137 experiments

auauucuuaggccCGGUCUUGAGGCAGGAACUGAGuaguuggugaacucgcucuauguuguucguucacucGCGACACAGUUCCUGUCCCAAGGCuaagucugugaauau
((((((.(((((..(((((((.(((((((((((.((.((.(((((((..((........))..))))))).)).)).))))))))))).)))))))..))))).))))))

Structure

      u     cC       A           A  a  u       uc  ucu 
auauuc uaggc  GGUCUUG GGCAGGAACUG Gu gu ggugaac  gc   a
|||||| |||||  ||||||| ||||||||||| || || |||||||  ||    
uauaag gucug  uCGGAAC CUGUCCUUGAC CA CG ucacuug  ug   u
      u     aa       C           A  G  c       cu  uug 

Annotation confidence Low

Genome context

8: 15132727-15132836 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR1861j

Mature osa-miR1861j-5p

• Accession: MIMAT0007805
• Description: Oryza sativa osa-miR1861j-5p mature miRNA
• Sequence: 14 - CGGUCUUGAGGCAGGAACUGAG - 35
• Evidence: experimental ; 454 [1]

Mature osa-miR1861j-3p

• Accession: MIMAT0056061
• Description: Oryza sativa osa-miR1861j-3p mature miRNA
• Sequence: 72 - GCGACACAGUUCCUGUCCCAAGGC - 95
• Evidence: experimental ; unknown

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465