Stem-loop osa-MIR1861k

Accession

MI0008257

Description

Oryza sativa osa-MIR1861k precursor miRNA

Literature search

8 open access papers mention osa-MIR1861k
(47 sentences)

Sequence

314554 reads, 1226.0 reads per million, 138 experiments

gcauauucuuaggccCGGUCUUGUGGCAAGAACUGAGuaguucguuaacucgcuacgcGGUUCUUGUCACAAGACCGAGucugugaauaugc
((((((((.(((((.((((((((((((((((((((.(((((..........))))).)))))))))))))))))))).))))).))))))))

Structure

        u     c                    A     ucgu 
gcauauuc uaggc CGGUCUUGUGGCAAGAACUG Guagu    u
|||||||| ||||| |||||||||||||||||||| |||||     
cguauaag gucuG GCCAGAACACUGUUCUUGGc caucg    a
        u     A                    g     cuca 

Annotation confidence High

Genome context

8: 15132529-15132620 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR1861k

Mature osa-miR1861k-5p

• Accession: MIMAT0007806
• Description: Oryza sativa osa-miR1861k-5p mature miRNA
• Sequence: 16 - CGGUCUUGUGGCAAGAACUGAG - 37
• Evidence: experimental ; 454 [1]

Mature osa-miR1861k-3p

• Accession: MIMAT0056062
• Description: Oryza sativa osa-miR1861k-3p mature miRNA
• Sequence: 59 - GGUUCUUGUCACAAGACCGAG - 79
• Evidence: experimental ; unknown

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465