Stem-loop osa-MIR1861l

Accession

MI0008258

Description

Oryza sativa osa-MIR1861l precursor miRNA

Literature search

8 open access papers mention osa-MIR1861l
(46 sentences)

Sequence

202115 reads, 856.0 reads per million, 136 experiments

ucguguugcauauucuuaggccCGAUCUUGAGGCAGGAACUGAGuaguuggugaacucgcucuauguuguucauucacucgcgacaCGGUUCCUGUCCCAAGAUCGggucugugaauauacaaauguga
.(((.(((.((((((.((((((((((((((.(((((((((((.((.((.((((((...((........))...)))))).)).)).))))))))))).)))))))))))))).)))))).))))))...

Structure

--u   g   c      u              A           A  a  u      cuc  ucu 
   cgu uug auauuc uaggccCGAUCUUG GGCAGGAACUG Gu gu ggugaa   gc   a
   ||| ||| |||||| |||||||||||||| ||||||||||| || || ||||||   ||    
   gua aac uauaag gucuggGCUAGAAC CUGUCCUUGGC ca cg ucacuu   ug   u
agu   -   a      u              C           a  g  c      acu  uug 

Annotation confidence High

Genome context

9: 13532426-13532554 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from osa-MIR1861l

Mature osa-miR1861l-5p

• Accession: MIMAT0007807
• Description: Oryza sativa osa-miR1861l-5p mature miRNA
• Sequence: 23 - CGAUCUUGAGGCAGGAACUGAG - 44
• Evidence: experimental ; 454 [1], Illumina [2]

Mature osa-miR1861l-3p

• Accession: MIMAT0056063
• Description: Oryza sativa osa-miR1861l-3p mature miRNA
• Sequence: 87 - CGGUUCCUGUCCCAAGAUCG - 106
• Evidence: experimental ; unknown

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465


2. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207