Stem-loop osa-MIR1861m

Accession

MI0008259

Description

Oryza sativa osa-MIR1861m precursor miRNA

Literature search

8 open access papers mention osa-MIR1861m
(46 sentences)

Sequence

308994 reads, 1248.0 reads per million, 133 experiments

uugcauauucuuaggccCGGUCUUGUGGCAAGAACUGAGuaguucguuaacucguuacccGGUUCUUGUCACAAGACCGAGuauaugaauaugcaa
.(((((((((.((.((.((((((((((((((((((((.((((..((......)))))).)))))))))))))))))))).)).)).))))))))).

Structure

u         u  g  c                    A    uu  uu 
 ugcauauuc ua gc CGGUCUUGUGGCAAGAACUG Guag  cg  a
 ||||||||| || || |||||||||||||||||||| ||||  ||   
 acguauaag au uG GCCAGAACACUGUUCUUGGc cauu  gc  a
a         u  a  A                    c    --  uc 

Annotation confidence High

Genome context

9: 13532649-13532744 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from osa-MIR1861m

Mature osa-miR1861m-5p

• Accession: MIMAT0007808
• Description: Oryza sativa osa-miR1861m-5p mature miRNA
• Sequence: 18 - CGGUCUUGUGGCAAGAACUGAG - 39
• Evidence: experimental ; 454 [1], Illumina [2]

Mature osa-miR1861m-3p

• Accession: MIMAT0056064
• Description: Oryza sativa osa-miR1861m-3p mature miRNA
• Sequence: 61 - GGUUCUUGUCACAAGACCGAG - 81
• Evidence: experimental ; unknown

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465


2. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207