Stem-loop osa-MIR1868

Accession

MI0008270

Description

Oryza sativa osa-MIR1868 precursor miRNA

Literature search

4 open access papers mention osa-MIR1868
(4 sentences)

Sequence

1453682 reads, 4978.0 reads per million, 142 experiments

ggaaaggcuuuguaaaacacacuauuugacaguuuggaaagcgugcUCACGGAAAACGAGGGAGCAGCCAaggcauuguucuuaccgguuuaugaauuggcuacuUCCUCGUUUUCCGUAAACACGCuucccgagcuucuaaacgguguguuucuugcaaaaacuuuau
..((((..(((((((((((((((.((((..(((((((.(((((((...((((((((((((((((.((((((..(((...((.....))...)))..)))))).))))))))))))))))...))))))).)))))))..)))).))))))))..)))))))..))))..

Structure

gg    gc       --        a    ac       a       cUC                C      gg   ugu  u 
  aaag  uuuguaa  aacacacu uuug  aguuugg aagcgug   ACGGAAAACGAGGGAG AGCCAa  cau   uc u
  ||||  |||||||  |||||||| ||||  ||||||| |||||||   |||||||||||||||| ||||||  |||   || a
  uuuc  aaacguu  uugugugg aaau  ucgagcc uuCGCAC   UGCCUUUUGCUCCUuc ucgguu  gua   gg c
ua    aa       cu        c    cu       c       AAA                a      aa   uuu  c 

Annotation confidence Medium

Genome context

4: 19715448-19715616 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR1868

Mature osa-miR1868-5p

• Accession: MIMAT0007820
• Description: Oryza sativa osa-miR1868-5p mature miRNA
• Sequence: 47 - UCACGGAAAACGAGGGAGCAGCCA - 70
• Evidence: experimental ; 454 [1], Illumina [2]

Mature osa-miR1868-3p

• Accession: MIMAT0056071
• Description: Oryza sativa osa-miR1868-3p mature miRNA
• Sequence: 106 - UCCUCGUUUUCCGUAAACACGC - 127
• Evidence: experimental ; unknown

References

1. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435


2. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465