Stem-loop osa-MIR1869

Accession

MI0008272

Description

Oryza sativa osa-MIR1869 precursor miRNA

Sequence

2865 reads, 17.0 reads per million, 135 experiments

aaggaacaccUGAGAACAAUAGGCAUGGGAGGUAuugggaaaacacaggaacauauugugaccccuaauuuuaaagggaaauaaugguugaggcUUUCCUCCAUGUUCCCAUGCCUaaugcucuuaggugcucuuuuu
(((((.(((((((((.((.((((((((((((.....((((((.(.....(((.((((((...((((........))))..)))))))))...).)))))).....)))))))))))).)).))))))))).)))))..

Structure

--     a         A  A            GUAuu      a acagg   a      gac    aau 
  aagga caccUGAGA CA UAGGCAUGGGAG     gggaaa c     aac uauugu   cccu   u
  ||||| ||||||||| || ||||||||||||     |||||| |     ||| ||||||   ||||    
  uuucu guggauucu gu aUCCGUACCCUU     UCCUUU g     uug guaaua   ggga   u
uu     c         c  a            GUACC      c --gag   -      -aa    aau 

Annotation confidence Low

Genome context

4: 21644852-21644989 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from osa-MIR1869

Mature osa-miR1869-5p

• Accession: MIMAT0007822
• Description: Oryza sativa osa-miR1869-5p mature miRNA
• Sequence: 11 - UGAGAACAAUAGGCAUGGGAGGUA - 34
• Evidence: experimental ; 454 [1]

Mature osa-miR1869-3p

• Accession: MIMAT0056073
• Description: Oryza sativa osa-miR1869-3p mature miRNA
• Sequence: 95 - UUUCCUCCAUGUUCCCAUGCCU - 116
• Evidence: experimental ; unknown

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465