Stem-loop osa-MIR1870

Accession

MI0008273

Description

Oryza sativa osa-MIR1870 precursor miRNA

Literature search

3 open access papers mention osa-MIR1870
(8 sentences)

Sequence

348090 reads, 1181.0 reads per million, 142 experiments

uagugucaaaguaauggaggauuugggaaauaaacugcguucaUGCUGAAUUAGACCUAGUGGGcauuuauacaucacaacacaugguacuguugcccuuuccuuuuucuagccuuagugUUGUGAUCUAUAUAUGCCCUUUAgggcuaauucagcaugaacauaguuuauucuccauuccucaaaucauccauuacuuuugacacuua
.(((((((((((((((((.((((((((((((((((((.((((((((((((((((.(((((.((((((.((((.((((((((((..(((.......................)))...)))))))))).)))).)))))).))))).)))))))))))))))).))))))))......)))).)))))).)))))))).)))))))))..

Structure

-u         -        g      -    ------        c                A     U      u    c          -au   acuguugccc 
  agugucaaa guaaugga gauuug ggaa      auaaacug guucaUGCUGAAUUAG CCUAG GGGcau uaua aucacaacac   ggu          u
  ||||||||| |||||||| |||||| ||||      |||||||| |||||||||||||||| ||||| |||||| |||| ||||||||||   |||          u
  ucacaguuu cauuaccu cuaaac ccuu      uauuugau caaguacgacuuaauc ggAUU CCCGUA AUAU UAGUGUUgug   ccg          u
au         u        a      u    accucu        a                g     U      U    C          auu   aucuuuuucc 

Annotation confidence Medium

Genome context

6: 21164755-21164963 [+]

Mature osa-miR1870-5p

• Accession: MIMAT0007823
• Description: Oryza sativa osa-miR1870-5p mature miRNA
• Sequence: 44 - UGCUGAAUUAGACCUAGUGGG - 64
• Evidence: experimental ; 454 [1], Illumina [2]

Mature osa-miR1870-3p

• Accession: MIMAT0015270
• Description: Oryza sativa osa-miR1870-3p mature miRNA
• Sequence: 121 - UUGUGAUCUAUAUAUGCCCUUUA - 143
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435


2. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465