Stem-loop osa-MIR1871

Accession

MI0008274

Description

Oryza sativa osa-MIR1871 precursor miRNA

Literature search

6 open access papers mention osa-MIR1871
(17 sentences)

Sequence

262849 reads, 1711.0 reads per million, 142 experiments

uaacaaugaauauaucuguuguuucucucaaaUCUAACAUGGUAUCGGAUCCAUAGguguagccauaucaaucuuaaagcuAUGGCUCUGAUAUCAUGUUGGUUUugaaggaaaugacugauauauuucauugua
..((((((((((((((.(((((((((.(((((.((((((((((((((((.((((((.(...................).)))))).)))))))))))))))).))))).))))))))).)))))).)))))))).

Structure

ua        -      u         c     U                U      g guagccau 
  acaaugaa uauauc guuguuucu ucaaa CUAACAUGGUAUCGGA CCAUAG u        a
  |||||||| |||||| ||||||||| ||||| |||||||||||||||| |||||| |        u
  uguuacuu auauag caguaaagg aguUU GGUUGUACUAUAGUCU GGUAuc a        c
-a        u      u         a     U                C      g aauucuaa 

Annotation confidence High

Genome context

6: 13330464-13330598 [+]

Mature osa-miR1871-5p

• Accession: MIMAT0056074
• Description: Oryza sativa osa-miR1871-5p mature miRNA
• Sequence: 33 - UCUAACAUGGUAUCGGAUCCAUAG - 56
• Evidence: experimental ; unknown

Mature osa-miR1871-3p

• Accession: MIMAT0007824
• Description: Oryza sativa osa-miR1871-3p mature miRNA
• Sequence: 82 - AUGGCUCUGAUAUCAUGUUGGUUU - 105
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465