miRBase entry: osa-MIR1872

Stem-loop osa-MIR1872


Accession
MI0008275
Description
Oryza sativa osa-MIR1872 precursor miRNA


Sequence

7209 reads, 26.0 reads per million, 129 experiments
uaauaucucAAUGCUUGUGGAGACUUAUGGUUgaacuguuGAACUGUAAGUCUGUGACGGGUAAacgagcauguaccc
..(((((((..(((((((.(((((((((((((.((...)).)))))))))))).).)))))))...))).))))....

Structure
--ua    -   -AA       G -            g  c 
    auau cuc   UGCUUGU G AGACUUAUGGUU aa  
    |||| |||   ||||||| | |||||||||||| || u
    ugua gag   AUGGGCA U UCUGAAUGUCAA uu  
ccca    c   caA       G G            G  g 


Annotation confidence Low
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Genome context
6: 4923862-4923939 [-]

Database links

Mature osa-miR1872-5p

Accession MIMAT0056075
Description Oryza sativa osa-miR1872-5p mature miRNA
Sequence 10 - AAUGCUUGUGGAGACUUAUGGUU - 32
Evidence experimental
unknown

Mature osa-miR1872-3p

Accession MIMAT0007825
Description Oryza sativa osa-miR1872-3p mature miRNA
Sequence 41 - GAACUGUAAGUCUGUGACGGGUAA - 64
Evidence experimental
454 [1]
Database links

References

  1. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465