Stem-loop osa-MIR1873

Accession

MI0008276

Description

Oryza sativa osa-MIR1873 precursor miRNA

Literature search

5 open access papers mention osa-MIR1873
(6 sentences)

Sequence

532304 reads, 2262.0 reads per million, 142 experiments

uagauuaugaaccUCAACAUGGUAUCAGAGCUGGAAGuccuaaaguugacaucaugauagccugacgaugguggagaccaugauaagcugauaccauguauuuugccgacauuguguuucuccaagauugugcuacaucacaaacuuagaaaaacuuagaacuucUAGCUCUGAUACCAUGUUGAGUUuuauggccu
.((.(((((((.((((((((((((((((((((((((((.((((((((......(((.((((...(((((..((((((.((((((..((.(((((...)))))..))....))))))..))))))..))))))))))))....)))).........)))).)))))))))))))))))))))))))).))))))).))

Structure

u  a       c                          c    ---------    gacauc   a    cug     gg      -c      --aa  -u     c 
 ag uuaugaa cUCAACAUGGUAUCAGAGCUGGAAGu cuaa         aguu      aug uagc   acgau  uggaga  caugau    gc  gauac  
 || ||||||| |||||||||||||||||||||||||| ||||         ||||      ||| ||||   |||||  ||||||  ||||||    ||  ||||| a
 uc gguauuU GAGUUGUACCAUAGUCUCGAUcuuca gauu         ucaa      uac aucg   uguua  accucu  guguua    cg  uuaug  
-  c       U                          a    caaaaagau    --acac   -    ---     ga      uu      cagc  uu     u 

Annotation confidence Medium

Genome context

7: 12755913-12756109 [+]

Mature osa-miR1873-5p

• Accession: MIMAT0007826
• Description: Oryza sativa osa-miR1873-5p mature miRNA
• Sequence: 14 - UCAACAUGGUAUCAGAGCUGGAAG - 37
• Evidence: experimental ; 454 [1], Illumina [2]

Mature osa-miR1873-3p

• Accession: MIMAT0056076
• Description: Oryza sativa osa-miR1873-3p mature miRNA
• Sequence: 166 - UAGCUCUGAUACCAUGUUGAGUU - 188
• Evidence: experimental ; unknown

References

1. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435


2. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465